five

Dendropsophus ebraccatus (hourglass treefrog) genome aDenEbr1, maternal haplotype. Dendropsophus ebraccatus isolate:aDenEbr1

收藏
NIAID Data Ecosystem2026-03-14 收录
下载链接:
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA910818
下载链接
链接失效反馈
官方服务:
资源简介:
The hourglass treefrog (Dendropsophus ebraccatus) name refers to its hourglass shape. The hourglass treefrog is found throughout Central America. It has plasticity in reproduction, laying eggs in water under some conditions and laying eggs on land under others. This assembly is from a trio of samples, with the parents (mother aDenEbr4 and father aDenEbr5) used to sort the haplotype reads of the child (aDenEbr1) to produce high-quality assemblies of both maternal and paternal inherited haplotypes. Justin Touchon from Vassar College collected and bred the animals, and coordinated the project. Genome sequencing and assembly was coordinated by Erich D. Jarvis and Olivier Fedrigo at the Rockefeller University Vertebrate Genome Lab, and as part of the Vertebrate Genomes Project (VGP).

沙漏雨蛙(hourglass treefrog,学名*Dendropsophus ebraccatus*)的名称源自其沙漏形的外形特征。该物种广泛分布于中美洲全境。该物种具备繁殖可塑性:在部分环境条件下会将卵产于水中,而在其他条件下则将卵产于陆地上。本次基因组组装基于三组亲子样本完成:研究人员以亲本(母本编号aDenEbr4、父本编号aDenEbr5)的测序数据对子代(编号aDenEbr1)的单倍型测序读段(haplotype reads)进行分型,最终获得了高质量的母本遗传单倍型与父本遗传单倍型组装结果。瓦萨学院(Vassar College)的贾斯汀·图钦(Justin Touchon)负责该实验动物的采集与繁育,并协调了本项目的整体推进。基因组测序与组装工作由洛克菲勒大学脊椎动物基因组实验室的埃里希·D·贾维斯(Erich D. Jarvis)与奥利维耶·费德里戈(Olivier Fedrigo)统筹完成,本项目隶属于脊椎动物基因组计划(Vertebrate Genomes Project, VGP)。
创建时间:
2023-01-09
二维码
社区交流群
二维码
科研交流群
商业服务