Models generated by AlphaFold3 used for CASP16 predictions

Elofsson and AF3-server predictions for CASP16

Organisation

The file Targets.MD contains comments about predictions and choices made for each target

Code

in bin/ all scripts used during the predictions are made available

Targets

All submitted targets for Elofsson (#241) and AF3-server (#304) can be found in targets/ (gzipped)

Scores

The file scores.csv contains all the pTM/ipTM/Ranking_confidence values for all models generated. In most cases the highest ranking_confidence score relates to the Elofsson prediction. and the fold_XYYYY_summary_confidences_0 related to the prediction submitted as the AF3-server. However, for large targets and round 0 models this is not always the case. Note also that for round 1 models often round 0 models are submitted. Due to space limitations

Please also examine the git repository for this project

 https://github.com/ElofssonLab/casp16/

Paper available here

https://doi.org/10.1101/2025.04.10.648174

CASP16竞赛中Elofsson团队与AF3-server的预测结果

## 组织信息
Targets.MD 文件包含了各预测靶标的相关说明与决策记录。

## 代码资源
bin/ 目录下提供了本次预测过程中使用的全部脚本文件。

## 靶标数据
Elofsson 团队（提交编号 #241）与 AF3-server（提交编号 #304）的所有已提交靶标数据均可在 targets/ 目录中获取（已 gzip 压缩）。

## 评分数据
scores.csv 文件包含了所有生成模型的 pTM、ipTM 及 Ranking_confidence 数值。多数情况下，置信度排名最高的结果对应 Elofsson 团队的预测，而 fold_XYYYY_summary_confidences_0 则对应以 AF3-server 形式提交的预测结果。但针对大型靶标与第 0 轮模型，该对应关系并非始终成立。此外需注意：第 1 轮模型通常会附带提交第 0 轮模型。受限于存储空间。

请查阅本项目的 Git 代码仓库：
https://github.com/ElofssonLab/casp16/

相关论文可通过以下链接获取：
https://doi.org/10.1101/2025.04.10.648174