Additional file 4: of Filamentous ascomycete genomes provide insights into Copia retrotransposon diversity in fungi

Annotation of fungal GalEa retrotransposons. The copy number corresponds to the number of elements returned by LTRharvest. The two most frequent sequences of the CHS (Conserved Hairpin Site) CHSeq1 are given in green and blue, and their different observed derivatives are shown in light blue. Mismatches between the sequences CHSeq1 and CHSeq2 are indicated in red, including the strictly conserved A/A mismatch at the third position of CHSeq2 (in red bold). The Interval corresponds to the distance between the two reverse complementary CHS sequences. The GC content was estimated on all entire sequences of each family. (XLSX 20 kb)

本数据集为真菌GalEa反转录转座子（fungal GalEa retrotransposons）的注释信息。其中拷贝数对应LTRharvest工具检出的转座子元件总数。CHS（保守发卡位点，Conserved Hairpin Site）中CHSeq1的两类最常见序列分别以绿色和蓝色标注，其观测到的各类衍生序列以浅蓝色展示。CHSeq1与CHSeq2间的碱基错配以红色标记，其中CHSeq2第3位严格保守的A/A错配以红色粗体标注。区间（Interval）指代两个反向互补的CHS序列之间的距离。各家族所有完整序列的GC含量（GC content）均经估算得到。（XLSX 20 kb）