Additional file 9 of Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.)

Additional file 9:Summary of LD estimates. The file contains the exact test for LD, genetic distances between pairs of SNP markers and minor allele frequencies (MAF) of alleles used for LD calculation. The pair-wise LD was measured using the squared allele-frequency correlations r2 according to Weir [50]. The statistical significance of individual r2 estimates was calculated by the exact test following the procedure described by Weir [50]. The false discovery rate (FDR) was established at 0.01 using the Benjamini & Hochberg method [52]. (XLSX 3 MB)

附加文件9：连锁不平衡（Linkage Disequilibrium，LD）估计结果汇总。本文件包含针对连锁不平衡的精确检验、单核苷酸多态性（Single Nucleotide Polymorphism，SNP）标记对之间的遗传距离，以及用于连锁不平衡计算的等位基因的次要等位基因频率（Minor Allele Frequency，MAF）。依据Weir[50]的研究方法，采用等位基因频率平方相关系数r2对成对连锁不平衡进行量化。各r2估计值的统计学显著性依据Weir[50]所述的实验流程，通过精确检验完成计算。采用本雅尼-霍赫贝格（Benjamini & Hochberg）方法[52]，将错误发现率（False Discovery Rate，FDR）阈值设定为0.01。（XLSX格式，文件大小3 MB）