Table 5 in Hidden in the hills: phylogeny of the freshwater mussel genus Alasmidonta (Bivalvia: Unionidae) and description of a new species

Table 5. Taxonomic hypotheses inferred by different automatic delimitation methods. New species indicated in bold. Abbreviations: ASAP: Assemble species by automatic partition; PTP: Poisson tree process; bPTP: Bayesian Poisson tree process; BFD*: Bayes factor delimitation
Delimitation methodA.A. varicosa (CapeA.A.A. ravenelianaA. ravenelianaA. arculaA.A.varicosaFear drainage)uaeharriensismarginata(Little Tennessee)(French Broad)triangulataundulataASAP (COI)ASAP (mtDNA_reduced)PTP (COI)Two spe-Three speciesciesPTP (ND1)Two spe-ciesPTP (mtDNA_reduced)Three spe-ciesPTP (mtDNA + ITS1)Not in datasetbPTP (COI)Eight speciesTwo spe-Four speciesThree speciesciesbPTP (ND1)Two spe-Two speciesciesbPTP (mtDNA_reduced)Three spe-Five speciesciesbPTP (mtDNA + ITS1)Not in datasetBFD* (best-fitting model)
Columns with the same colour indicate that the method inferred taxa to be the same species. Methods split taxa into more than one species if designated as two or more species.

表5 不同自动物种界定方法推导的分类学假说。新物种以粗体标注。缩写说明：ASAP：自动划分物种组装法（Assemble Species by Automatic Partition, ASAP）；PTP：泊松树过程法（Poisson Tree Process, PTP）；bPTP：贝叶斯泊松树过程法（Bayesian Poisson Tree Process, bPTP）；BFD*：贝叶斯因子界定法（Bayes Factor Delimitation, BFD*）。
本次分析涉及的类群依次为：开普菲尔流域的A.A. varicosa、A. raveneliana、A. raveneliana、A. arcula、A.A. varicosa、uaeharriensis、marginata（小田纳西种群）、triangulata（法国布罗德流域）、undulata。
各物种界定方法的结果如下：
ASAP (COI)：2个物种、3个物种；
ASAP (mtDNA_reduced)：对应类群界定结果；
PTP (COI)：8个物种、2个物种、4个物种、3个物种；
PTP (ND1)：2个物种；
PTP (mtDNA_reduced)：3个物种；
PTP (mtDNA + ITS1)：未纳入数据集；
bPTP (COI)：8个物种、2个物种、4个物种、3个物种；
bPTP (ND1)：2个物种、2个物种；
bPTP (mtDNA_reduced)：3个物种、5个物种；
bPTP (mtDNA + ITS1)：未纳入数据集；
BFD* (best-fitting model)：对应类群界定结果。
颜色相同的列代表该方法将对应分类单元界定为同一物种；若某方法将分类单元划分为两个及以上物种，则以多个物种标注其结果。