Additional file 9: of Transcriptomic and proteomic analyses of core metabolism in Clostridium termitidis CT1112 during growth on α-cellulose, xylan, cellobiose and xylose

Highly expressed ABC type sugar transporters identified in the transcriptome and proteome of C. termitidis. Normalized proteomic Z-scores Pnet are represented as: (i) P0: xylose grown cells – cellobiose grown cells; (ii) P1: α-cellulose grown cells – cellobiose grown cells; and (iii) P2: xylan grown cells – cellobiose grown cells. Normalized transcriptomic Z-scores Rnet are represented as: (i) R0: xylose grown cells – cellobiose grown cells; (ii) R1: α-cellulose grown cells – cellobiose grown cells; and (iii) R2: xylan grown cells – cellobiose grown cells. Highlighted cells represent Znet-value threshold for up and down regulation of ± 1.65 (representing the outermost 10 % of the data set). Up-regulation in the corresponding substrate with respect to cellobiose are highlighted in red, while down-regulation in the corresponding substrate with respect to cellobiose are highlighted in green. (XLSX 11 kb)

本研究在白蚁栖热孢菌（C. termitidis）的转录组（transcriptome）与蛋白质组（proteome）中鉴定得到高表达的ABC型糖类转运蛋白（ABC type sugar transporters）。标准化蛋白质组学Z评分Pnet的定义如下：(i) P0：木糖培养细胞与纤维二糖培养细胞的差值；(ii) P1：α-纤维素培养细胞与纤维二糖培养细胞的差值；(iii) P2：木聚糖培养细胞与纤维二糖培养细胞的差值。标准化转录组学Z评分Rnet的定义如下：(i) R0：木糖培养细胞与纤维二糖培养细胞的差值；(ii) R1：α-纤维素培养细胞与纤维二糖培养细胞的差值；(iii) R2：木聚糖培养细胞与纤维二糖培养细胞的差值。高亮单元格所采用的上下调Znet值阈值为±1.65，该阈值对应数据集分布中最外侧的10%数据。以纤维二糖为参照时，对应底物中的上调情况以红色高亮标注，下调情况则以绿色高亮标注。（XLSX格式，文件大小11 KB）