Data and code associated with manuscript "Close-kin mark-recapture informs critically endangered terrestrial mammal status".

The data and files in these directories underpin the extension and application of close-kin mark-recapture (CKMR) to the critically endangered Christmas Island flying-fox. The data were generated over a set of collaborative projects between the Commonwealth Scientific and Industrial Research Organisation and the CIFF Ecology Team, which included members from West. Syd University, Taronga Zoo, Uni SA, and Parks Australia. The data were generated across two rounds of data generation and reporting, where round 1 was, in a sense, a pilot CKMR study that set the foundation for the generation of more genetic data in round 2. The primary data are SNP genotype data generated using the DArTSeq technology, mtDNA sequences in Fasta format, and the important covariate data gathered through field studies on CIFF. The data further accompany the manuscript "Lloyd-Jones, L et al. Close-kin mark-recapture informs critically endangered terrestrial mammal status", 2022". The results summarised in that manuscript appear in their raw form in this directory along with the scripts used to generate them.

本目录下的数据集与文件，为近缘个体标记重捕（close-kin mark-recapture, CKMR）技术针对极危物种圣诞岛狐蝠（Christmas Island flying-fox，以下简称CIFF）的拓展与应用提供支撑。该数据集由澳大利亚联邦科学与工业研究组织与CIFF生态研究团队的系列合作项目生成，团队成员来自西悉尼大学、塔龙加动物园、南澳大学以及澳大利亚公园管理局。数据集的生成与报告共分为两轮，从某种意义上来说，第一轮为CKMR预实验研究，为第二轮生成更多遗传数据奠定了基础。核心数据集包括采用DArTSeq技术生成的单核苷酸多态性（single nucleotide polymorphism, SNP）基因型数据、Fasta格式的线粒体DNA序列，以及通过针对CIFF的野外调查收集得到的关键协变量数据。本数据集还配套了2022年发表的论文"Lloyd-Jones, L等：近缘个体标记重捕技术揭示极危陆生哺乳动物种群现状"（原文标题：Close-kin mark-recapture informs critically endangered terrestrial mammal status），该论文中汇总的研究结果以原始数据形式存储于本目录下，同时附带生成这些结果的分析脚本。