Genomic data of Nanmaohu Park vascular plant specimen, RL0824
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http://gigadb.org/dataset/101887
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We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001608. Preliminary identification is that it is of the family Celastraceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 1076290000bp. We have generated 74540000000bp of data, which gives a theoretical coverage of 69.3x.
我们在中国云南瑞丽植物园开展维管植物采样工作。所有采样均覆盖经度97.646389°至98.099167°、纬度23.878333°至24.155556°的地理区域,海拔范围为740米至1200米。本次共计采集1093份维管植物样本,每份样本均取幼叶用于测序,并同步制备凭证标本。所有标本均保存于中国国家基因库标本馆(Herbarium of China National GeneBank, HCNGB)。其中760份样本成功提取到符合测序要求的DNA,剩余333份样本仅完成凭证标本制备,相关植物图像已收录于本数据集。上述760份样本隶属于48个目、135个科,共计约696种维管植物。目前我们仍在推进所有标本的正式分类鉴定工作,但截至论文发表时,仅极少数标本被鉴定至科以上分类阶元。本数据集包含编号为HCNGB:RUILI:HCNGB_00001608的植物凭证标本对应的基因组数据与图像资料。经初步鉴定,该标本隶属于卫矛科(Celastraceae)。通过测序数据的K-mer分布分析,预测其基因组大小为1076290000bp;本次测序共产出74540000000bp的测序数据,理论覆盖度达69.3×。
提供机构:
GigaScience Database
创建时间:
2019-01-24



