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Total CtrA regulon, comprising all genes that are differentially expressed upon depletion of CckA and/or ChpT.

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NIAID Data Ecosystem2026-03-11 收录
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https://figshare.com/articles/dataset/Total_CtrA_regulon_comprising_all_genes_that_are_differentially_expressed_upon_depletion_of_CckA_and_or_ChpT_/12257228
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All genes whose expression levels differed at least 2.5-fold (1.3 log2-fold) from the values obtained for the wild type were classified as differentially expressed. Only genes with a p-value <0.05 (paired T-test) and an RPKM value of >25 were taken into account. Genes that are highlighted in yellow are part of the direct regulon. Genes are subdivided into functional categories based on manual annotation using the UniProt database. (XLSX)

与野生型(wild type)样本的表达量检测值相比,表达水平差异至少达2.5倍(即1.3 log₂倍变化)的所有基因,均被归类为差异表达基因。仅纳入经配对t检验(paired T-test)得到p值小于0.05,且RPKM(Reads Per Kilobase per Million mapped reads)值大于25的基因。以黄色高亮标记的基因属于直接调控子(direct regulon)的组成部分。基于UniProt数据库的手动注释,将基因划分为不同的功能类别。 (XLSX)
创建时间:
2020-04-23
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