Additional file 2: of Time matters! Developmental shift in gene expression between the head and the trunk region of the cichlid fish Astatotilapia burtoni

Table S1. Sequencing data and processing. Table S2. Statistics for the improved genome annotation. Table S3. De novo assembly statistics. Table S4. Hybrid reference assembly summary statistics. Table S5. Species distribution in Blast annotation of the new transcriptome assembly. For each sequences, we exported the top blast hit and its species of origin. Species names as well as taxa are provided. Table S6. Transcript expression outliers in the trunk (Fig. 4c. Table S7. Number of differentially expressed transcripts for all pairwise comparisons. Table S8. Number of transcripts for each expression profile shown in Fig. 6b for each tissue type. Table S9. Number of transcripts in each gene expression network module. Table S10. Number of novel transcripts per gene expression module. Table S11. IDs of transcripts under positive selection. Table S12. GO annotations for fin development and genes within these categories for the lightyellow module. (XLSX 115 kb)

表S1 测序数据与处理流程。表S2 优化后的基因组注释统计信息。表S3 从头组装（de novo assembly）统计信息。表S4 杂交参考组装汇总统计信息。表S5 新转录组组装的BLAST（Basic Local Alignment Search Tool）注释物种分布情况：针对每条序列，导出其最优BLAST比对结果及其来源物种，同时提供物种名称与分类阶元信息。表S6 树干组织转录本表达异常值（对应图4c）。表S7 所有两两比较组的差异表达转录本数量统计。表S8 各组织类型对应图6b中各类表达谱的转录本数量。表S9 各基因表达网络模块中的转录本数量。表S10 各基因表达模块中的新转录本数量。表S11 受正向选择作用的转录本ID列表。表S12 浅黄模块（lightyellow module）中与鳍发育相关的基因本体（Gene Ontology，GO）注释信息，以及该类别下的相关基因。（XLSX格式，115 KB）