<b>Towards evidence-based biodiversity assessment tools for agroforestry systems</b>

This documents contain the datasets and code being used in the research article: "Towards evidence-based biodiversity assessment tools for agroforestry systems".This contains data and R-code on:The meta-analyses that were reviewed:Meta-analysis - summary.rmd (Full dataset - raw version - not being used in most recent version of paper)Meta-analysis overview - clean coding.rmd (Rcode for filtering and analyzing the broad MA dataset - not being used in most recent version of paper)Meta-analysis metrics - clean coding.rmd (Rcode for analyzing)Meta-analysis metrics - recalculating effect sizes.R (functions for effect size recalculation)Secondary_RR_analysis.R (functions for second-order analyses)Full dataset - meta-analyses.csv (Full dataset - cleaned - not being used in most recent version of paper)Full dataset filtered - landscape interactions.csv (filtered dataset generated with R - not being used in most recent version of paper)Full dataset filtered - meta-analyses.csv (filtered dataset generated with R - not being used in most recent version of paper)Full dataset - meta-analyses - metrics.csv (dataset with relevant effect sizes)The questionnaire that was conducted:Questionnaire biodiversity.csv (Full dataset)Questionnaire - clean coding.rmd (Rcode for filtering and analyzing)The biodiversity tools that were reviewed:Full dataset - tools.csv (Full dataset)Tools - NMDS.csv (Full dataset - NMDS ordination values)Tools - clean coding.rmd (Rcode for filtering and analyzing)This work was supported by the DigitAF project (Grant Agreement N° 101059794), co-funded by the European Commission, European Research Agency, within the Horizon Europe programme.

本文件包含研究论文《面向农林业系统循证生物多样性评估工具》（Towards evidence-based biodiversity assessment tools for agroforestry systems）所使用的数据集与代码。本资源涵盖以下内容：

一、元分析（meta-analysis）相关数据与R代码：
1. Meta-analysis - summary.rmd：完整数据集原始版本（未在论文最新版本中使用）
2. Meta-analysis overview - clean coding.rmd：用于筛选与分析广义元分析数据集的R代码（未在论文最新版本中使用）
3. Meta-analysis metrics - clean coding.rmd：用于分析的R代码
4. Meta-analysis metrics - recalculating effect sizes.R：用于重算效应量的函数脚本
5. Secondary_RR_analysis.R：用于二阶分析的函数脚本
6. Full dataset - meta-analyses.csv：完整数据集清洗后版本（未在论文最新版本中使用）
7. Full dataset filtered - landscape interactions.csv：通过R语言生成的筛选后数据集（未在论文最新版本中使用）
8. Full dataset filtered - meta-analyses.csv：通过R语言生成的筛选后数据集（未在论文最新版本中使用）
9. Full dataset - meta-analyses - metrics.csv：包含相关效应量的数据集

二、问卷调查相关数据：
1. Questionnaire biodiversity.csv：完整数据集
2. Questionnaire - clean coding.rmd：用于筛选与分析的R代码

三、所评估的生物多样性工具相关数据：
1. Full dataset - tools.csv：完整数据集
2. Tools - NMDS.csv：完整数据集——非度量多维标度（Non-metric Multidimensional Scaling，NMDS）排序值
3. Tools - clean coding.rmd：用于筛选与分析的R代码

本研究获DigitAF项目（资助协议编号：N° 101059794）资助，该项目由欧盟委员会、欧洲研究署联合支持，隶属于地平线欧洲（Horizon Europe）计划。