Phalaenopsis aphrodite LTRharvest consensus sequences with 2-ODD domain

LTRharvest predictions were clustered on a similarity basis and the sequences from each cluster were aligned to derive consensus sequences. Following this approach, we obtained 254 and 178 consensus from the <em>P. aphrodite</em> and <em>P. equestris</em> genome assemblies, respectively. After searching for conserved protein domains across these sequences, we identified 15 consensus encoding the 2-ODD domain in <em>P. aphrodite.</em>

我们基于相似性对LTRharvest的预测结果进行聚类，随后对每个聚类中的序列进行多序列比对以推导共有序列（consensus sequences）。采用该分析流程，我们分别从<em>P. aphrodite</em>和<em>P. equestris</em>的基因组组装结果中获得了254条和178条共有序列。对上述序列开展保守蛋白质结构域检索后，我们在<em>P. aphrodite</em>中鉴定出15条编码2-ODD结构域的共有序列。