Supp. Table S21 from Genetic Mechanisms of Immune Evasion in Colorectal Cancer

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Supplementary Table S21: Segmented copy-number ratios

创建时间：

2018-06-01

Array CGH analysis of human colorectal tumors

结直肠癌拷贝数变异

CpG岛甲基化

The concept of the CpG island methylator phenotype (CIMP) in colorectal cancers (CRCs) is widely accepted, though the timing of its occurrence and its interaction with other genetic defects early duri

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Additional file 17: of Cytolytic activity correlates with the mutational burden and deregulated expression of immune checkpoints in colorectal cancer

结直肠癌拷贝数变异

肿瘤免疫微环境

Table S8. GISTIC (v2.0.22) analysis results for rectal cancers (READ). GISTIC was used to detect recurrent somatic copy number alterations (SCNA) in CYT-high and -low rectum cancers, using MutSigCV (v

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Additional file 1: Table S1. of ENVE: a novel computational framework characterizes copy-number mutational landscapes in colorectal cancers from African American patients

结直肠癌拷贝数变异

癌症基因组数据

Cohorts, ethnicity, and tumor stage of samples used for WES, SNP array, and qPCR. Table S2. Regions with significant copy-number alterations, as detected by ENVE, in the 30 AA CRC WES cases. Table S3.

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CNAs affecting transcription factor binding sites that may affect CRC related genes.

结直肠癌拷贝数变异

转录因子结合位点调控

A: TFBS in regions where the copy number changes in excess of +/−35% are marked on chromosomes 7 (gain), 14 (loss), 20 (short arm gain (males), loss (females), long arm gain (both sexes)), 21 (loss) a

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Supplementary Table 2 from Negative Selection Maintains Grossly Altered but Broadly Stable Karyotypes in Metastatic Colorectal Cancer

结直肠癌拷贝数变异

转移性肿瘤核型稳定性

Per genomic bin copy number calls (gains=3, diploid=2, loss=1) for data presented in Figure 1.

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