SoyBase

This FAIRsharing record describes: SoyBase, the USDA-ARS soybean genetic database, is a comprehensive repository for professionally curated genetics, genomics and related data resources for soybean. SoyBase contains the most current genetic, physical and genomic sequence maps integrated with qualitative and quantitative traits. The quantitative trait loci (QTL) represent more than 18 years of QTL mapping of more than 90 unique traits. SoyBase also contains the well-annotated 'Williams 82' genomic sequence and associated data mining tools. The genetic and sequence views of the soybean chromosomes and the extensive data on traits and phenotypes are extensively interlinked. This allows entry to the database using almost any kind of available information, such as genetic map symbols, soybean gene names or phenotypic traits. SoyBase is the repository for controlled vocabularies for soybean growth, development and trait terms, which are also linked to the more general plant ontologies.

本FAIRsharing记录介绍的内容如下：SoyBase是美国农业部农业研究局（USDA-ARS）旗下的大豆遗传数据库，是一套面向大豆、经专业编校整理的遗传学、基因组学及相关数据资源的综合资源库。该库收录了当前最新的遗传图谱、物理图谱与基因组序列图谱，并整合了质量性状及数量性状相关数据。其中收录的数量性状位点（QTL）源自超过18年间针对90余种独特性状的QTL定位研究成果。SoyBase还包含注释完善的"Williams 82"基因组序列及配套的数据挖掘工具。大豆染色体的遗传视图与序列视图，以及海量的性状与表型数据均实现了深度互联，支持用户通过几乎任意类型的现有信息检索该库，例如遗传图谱标记符号、大豆基因名称或表型性状。此外，SoyBase还是大豆生长、发育及性状术语受控词表的资源库，该词表同时与更通用的植物本体相关联。