Supplementary information to Gaps in the conservation of phylogenetic diversity in the Chilean vascular flora

"Rscript.R" is the R code that, together with the other files, was used to generate the results, including all figures and table S2. "Appendix.csv" contains all data on Chilean vascular plant species as well as their presence in both in-situ and ex-situ conservation units necessary for all downstream analyses. "fields_TableS2_paper_inex_situ.txt" and "plant_genus_list_modified.csv" are auxiliary files read by Rscript.R needed to build table S2. "plant_megatree.tre" and "plant_genus_list_modified.csv" are the backbone phylogenetic tree and the taxonomic assignments of genera to families, respectively, obtained from https://github.com/jinyizju/U.PhyloMaker. They are read in the Rscript.R and are used to build the phylogenetic trees with U.Phylomaker employed in the analyses. Note that plant_genus_list_modified.csv was modified in some assignments with respect to the original file in order to fit some genera with family assignments different from the backbone taxonomy employed in our work.