Supplementary data for 'scROSHI - robust supervised hierarchical identification of single cells'

This record contains some of the supplementary files for the manuscript "scROSHI - robust supervised hierarchical identification of single cells" by Prummer et al. The file "scROSHI_Fig03_counts.zip" contains SingleCellExperiment R objects as RDS files, "sce_A.RDS", "sce_B.RDS", "sce_C.RDS", corresponding to the three samples shown in Figure 3. The 'assay' slot of the SingleCellExperiment objects contains the gene x cell raw count matrix, the 'colData' slot contains the description for each cell: barcode, celltype_major, celltype_final, cnv_status. Please see https://github.com/ETH-NEXUS/scROSHI for code generating the cell type labels.