Endometriosis CNV association results at specific loci.

Copy-Number-Variant (CNV data from a case∶control cohort was analyzed for association with endometriosis. Of 34 candidate loci identified using ParseCNV 22 loci passed a nominal significance threshold upon individual inspection and three of these passed the genome-wide significance threshold of 9.3×10−4. The coordinates reported are based on NCBI build 37, hg19 reference sequence. ap-Values were calculated using Fisher's exact test. bCNV is located 20,000 bp downstream of SGCZ. cFlanking genes over 90 kb away. dThe analysis of the X chromosome included 1,845 endometriosis cases and 6,640 female population control subjects.