Input files for generating maximum likelihood trees using RAxML:raxml -p $Seed -f a -x $Seed -s $infile -n $outfile -m GTRGAMMA -# 100\nCode and input files for generating cophylogeny for CH7BAC7 and
Supplementary data files include: - Single-gene phylogenetic analysis of metabolic enzymes and ERAD-like protein translocation machinery (SELMA) in squirmids (.treefiles) - Plastid genome sequences of
