Description of programs and procedures to use the FungiSearch pipeline (version 2) dedicated to the analysis of Illumina MiSeq paired-end reads for the detection of fungal pathogens.
This file contains both forward (t1-UNIS_S1_L001_R1_001.fastq) and reverse (t1-UNIS_S1_L001_R2_001.fastq) Illumina read data and associated barcode mapping files. In Mapfile_T1 forward primer is linke
