Input files for generating maximum likelihood trees using RAxML:raxml -p $Seed -f a -x $Seed -s $infile -n $outfile -m GTRGAMMA -# 100\nCode and input files for generating cophylogeny for CH7BAC7 and
Barcode files (Individual sample names and associated barcode/molecular identifier) associated with clustering and SNAPP runs. Formatted for analysis with AftrRAD.
