Juicebox provides a visualization system for Hi-C contact maps with unlimited zoom
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资源简介：
Source code for Juicebox sent to reviewers
应用场景：
创建时间：
2016-07-01
相关数据集
Additional file 3: Table S2. of HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking
HiC-bench input-output objects. The table summarizes the inputs and outputs of the TAD-calling task using three different methods with parameter values stored in the params files (column 2). The first
DataCite Commons2024-12-17 更新110
Additional file 3: Table S2. of HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking
HiC-bench input-output objects. The table summarizes the inputs and outputs of the TAD-calling task using three different methods with parameter values stored in the params files (column 2). The first
NIAID Data Ecosystem60
Summary table for the analyzed Hi-C reads from two cell lines and five cell types.
Shown are the number of reads analyzed per set and the number of reads remaining after the quality control (QC) steps. Shown are the count and percentage of QC reads that mapped to the rDNA arrays. Da
NIAID Data Ecosystem30
Coolpup.py – a versatile tool to perform pile-up analysis of Hi-C data
Data used for the analysis and to generate the figures. After un-tar-ing, the data is present in three folders. /coolers contains Hi-C data in the .cool format, and associated text files. /beds contai
Mendeley Data2024-06-25 更新60
