Dataset and scripts companions of the publication "Molecular identification and diversity assessment of Tyrrhenian Romulea species (Iridaceae)"

Multi-locus genetic data obtained using the hybseq method with the Angiosperms353 kit; nuclear (vcf file) and plastid data (fasta) analysed with 5 scripts deposited here. All the details are described in a paper submitted to PlosOne and in a preprint deposited on ecoevorxiv and availalbe at https://doi.org/10.32942/X2N95H. This research was funded by the Port-Cros National Park (convention 2022-593). (1) data_files Metadata: metaTyrr_ordered.txt, metaTyrr_ordered_k15.txt, S1_file.csv Reference for nuclear variant calling : ,Cons_superconti_331.fas Reference for plastid variant calling : FloFrBag2_plastome.fasta (R. florentii plastome) Nuclear data : Tyrr-331-snpbi-maf001.vcf, Tyrr_genoC_AutoAllo4X_ref331.Rdata Plastid data : Tyrr_PTD_min3_kpi_clean_kpi.fasta (2) Scripts 1_HindHE_&_Continous_Genotype_Calling.R 2_Heatmap_completness.R 3_Clustering_&_heatmap_genotypes.R 4_DAPC.R 5_plastid_ML5tree_iqtree.bash (3) Graphical results Plastid_phylogeny.pdf HindHE_distribution.tif Genotypes_similarities_heatmap.tiff DAPC.tiff