AllTheBacteria/All-representative-ids
收藏Hugging Face2026-05-19 更新2026-03-29 收录
下载链接：
https://hf-mirror.com/datasets/AllTheBacteria/All-representative-ids
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资源简介：
该数据集包含从多个微生物基因组数据库（ATB、GTDB、MGnify、SPIRE、mOTUs和HRGM）中提取的样本标识符列表，这些标识符基于核苷酸序列使用sketchlib v0.2.5在不同相似性水平下进行去重。数据集的构建涉及使用sketchlib命令进行草图构建和距离计算，然后通过get_representatives.py脚本生成代表性样本，具体命令和流程在README中详细说明。
List of sample identifiers from ATB, GTDB, MGnify, SPIRE, mOTUs and HRGM datasets, deduplicated at varying levels of identity based on nucleotide sequence using sketchlib v0.2.5. Sketching and distance calculation conducted with specified commands, and representatives were generated using the get_representatives.py script with thresholds 0.80,0.85,0.90,0.95,0.98,0.99,1.0.
提供机构：
AllTheBacteria
