Here are the associated files for the dissertation of Xavier Bonner Chapter 3 "Identifying Sequence Positions In Gp120 that are Important for Replicating in Low CD4 Cells in the CNS." The input files
To study the relationship between host-pathogen adaptation and coreceptor usage of HIV-1, the viral env and p24 proteins were sequenced of subtype C, chronic, treatment-naive HIV-infected patients
Previously not capable in the original HIVToolbox application. Conservation can be examined for all viruses or within subtypes. NP_705926 is used as the reference sequence for protease.