Additional file 4 of Cisplatin exposure alters tRNA-derived small RNAs but does not affect epimutations in C. elegans

Additional file 4: Table S3. tRNAs 3’ halves potential target genes. To identify potential target genes, small RNAs corresponding to tRNA 3’ halves were extracted from all the lines and combined into a single file, along with the annotation indicating which tRNA the sequence was derived from. This was aligned to the cell genome allowing up to 3 mismatches. Protein-coding genes overlapping with mismatched tRNA fragments were then obtained using bedtools intersect, to identify genes that were potentially targeted by tRNAs.