Total RNA-seq in WT and HIRA KO HeLa cells

ChEBI2025-08-07 更新2026-07-12 收录

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Total RNA-seq in WT and HIRA KO HeLa cells

创建时间：

2025-08-07

Total RNA-seq in WT and HIRA KO HeLa cells

We performed total RNA-seq of G1/S-synchronised HeLa cells that are wild-type (WT) or knock-out (KO) for the H3.3-specific chaperone HIRA and bear an exogenous H3.1-SNAP and H3.3-SNAP gene.

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RNA-seq analysis of HeLa METTL5-KO cells compared to WT HeLa cells. RNA-seq analysis of HeLa METTL5-KO cells compared to WT HeLa cells

To identify transcripts upregulated and downregulated upon METTL5 knockout in HeLa cells. Overall design: Comparing RNA isolated from input samples to RNA isolated from a FLAG immunoprecipitation of F

NIAID Data Ecosystem10

Chromatin accessibility by ATAC-seq in WT and HIRA KO HeLa cells

We profiled accessibility by ATAC-seq of G1/S-synchronised HeLa cells that are wild-type (WT) or knock-out (KO) for the H3.3-specific chaperone HIRA and bear an exogenous H3.1-SNAP and H3.3-SNAP gene.

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WT HeLa total RNA-seq (RiboMinus). WT HeLa total RNA-seq (RiboMinus)

We sequenced total RNA from HeLa WT cells to quantify the expression of protein-coding mRNAs and lincRNAs. RPKM values were used to normalize iCLIP binding to RNA abundance. Overall design: total RNA

NIAID Data Ecosystem20

Chromatin accessibility by ATAC-seq in WT and HIRA KO HeLa cells

ChEBI2025-08-07 更新00