The sequencing raw data including 10 different phyla (Acidobacteria, Actinobacteria, Bacteria-unclassified, Bacteroidetes, Candidate-division-TM7, Cyanobacteria, Firmicutes, Fusobacteria, Proteobacteria, Tenericutes) of bacteria and 2 phyla of fungi. Bacteria and fungi

The study was aimed to evaluate the microbe diversity in the 11 milk samples from dairy cows with mastitis through Miseq platform.