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Simulated Tomograms used for TomoTwin

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Zenodo2022-06-13 更新2026-04-07 收录
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Simulated Training Tomograms for the TomoTwin particle picking procedure. It contains 8 sets: 7 simulation named <em>tomo_simulation_round_X</em> and 1 generalization tomogram named <em>tomo_simulation_gen</em>. The folder structure is as follows: files_filament: PDB and configuration file for adding actin filaments to the tomogram pdbs: Particle PDBs used for simulation. <em>tomo_NUMBER_TIMESTAMP:</em> Tomogram folders. Each folder contains <em>tiltseries_rec.mrc</em>: The reconstruction <em>coords</em>: .coord files with coordinates of the individual proteins. All tomograms where simulated using the TEM-Simulator-Scripts. The command looked like this: <pre><code class="language-bash">tsimscripts_pipe.sh --pdbs pdbs/*.pdb --npdbs 150 --output out/tomo_01/ --pdbs_fil files_filament/*.pdb --settings_fil files_filament/*.json --nsubs 100</code></pre>

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2022-06-13
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