Simulated-Metagenome.xlsx

List of microbial genomes used to construct the simulated metagenome used in an upcoming study. Simulated metagenomes were constructed using gargammel:#empirical ancient DNA distribution:./gargammel.pl --comp 1,0,0 -n 1500000 --loc 4 --scale 0.3 -briggs 0.03,0.25,0.01,0.5 MEGAN-MALT-benchmark-plus-Ecoli/ -o Euk-DB-Contam/#100bp fragments:./gargammel.pl --comp 1,0,0 -n 1500000 --l 100 -briggs 0.03,0.25,0.01,0.5 MEGAN-MALT-benchmark-plus-Ecoli/ -o Euk-DB-Contam/100bp本数据集为用于构建某待发表研究中所用模拟宏基因组（simulated metagenome）的微生物基因组列表。模拟宏基因组通过gargammel工具构建，具体构建命令如下： # 经验化古DNA（ancient DNA）分布：执行命令 ./gargammel.pl --comp 1,0,0 -n 1500000 --loc 4 --scale 0.3 -briggs 0.03,0.25,0.01,0.5 MEGAN-MALT-benchmark-plus-Ecoli/ -o Euk-DB-Contam/ # 100碱基对（base pair, bp）片段模式：执行命令 ./gargammel.pl --comp 1,0,0 -n 1500000 --l 100 -briggs 0.03,0.25,0.01,0.5 MEGAN-MALT-benchmark-plus-Ecoli/ -o Euk-DB-Contam/100bp