Additional file 2 of Identification of a cytokine-dominated immunosuppressive class in squamous cell lung carcinoma with implications for immunotherapy resistance

Additional file 2: Table S1. Publicly available data sets used in this study. Table S2. Tools and software used in this study. Table S3. Publicly available gene signatures used in the study. Table S4. Exhausted Immune classifier (167 genes) with significantly different expression between the Exhausted Immune class and the rest class. Table S5. Differently methylation comparison of the 216 CpG located in the promoters of 162 exhaustion related genes. Table S6. Correlation between gene expression and methylation in the 162 exhaustion related genes with differentially methylated promoter.