Interplay between m6A modification and overall transcripts quantity: Impacts on mRNA composition in plant stress granules - transcriptomic data

Title of Dataset: Interplay between m6A modification and overall transcripts quantity: Impacts on mRNA composition in plant stress granules - transcriptomic dataThe datasets contain data from RNA-seq analysis of 9 libraries obtained from narrow-leafed lupin (Lupinus angustifolius) roots grown under physiological conditions, 15-hour hypoxia and 6-hour reoxygenation, described in publication 'Interplay between m6A modification and overall transcripts quantity: Impacts on mRNA composition in plant stress granules'.Authors:Dawid Jakub Kubiak, 1 ([e-mail])Michal Wojciech Szczesniak, 2 Institutions:1. Department of Cellular and Molecular Biology, Nicolaus Copernicus University, Lwowska 1, 87-100, Torun, Poland2. Institute of Human Biology and Evolution, Faculty of Biology, Adam Mickiewicz University, Poznan 61-614, PolandDate of data collection: 2023Geographic location of data collection: PolandKeywords: stress granules, hypoxia, lupinus, transcriptomeLanguage information: EnglishInformation about funding sources that supported the collection of the data: National Science Center Poland, grant PRELUDIUM; 2022/45/N/NZ9/04015SHARING/ACCESS INFORMATIONLicenses/restrictions placed on the data: CC0DATA & FILE OVERVIEWFile List:1_H_vs_K_up_genes (The file contains the results of the gene ontology analysis performed for up-regulated genes in control versus hypoxia samples in .txt format)2_H_vs_K_down_genes (The file contains the results of the gene ontology analysis performed for dwon-regulated genes in control versus hypoxia samples in .txt format)3_R_vs_H_up_genes (The file contains the results of the gene ontology analysis performed for up-regulated genes in reoxygenation versus hypoxia samples in .txt format)4_R_vs_H_down_genes (The file contains the results of the gene ontology analysis performed for down-regulated genes in reoxygenation versus hypoxia samples in .txt format)5_R_vs_K_up_genes (The file contains the results of the gene ontology analysis performed for up-regulated genes in reoxygenation versus control samples in .txt format)6_R_vs_K_down_genes (The file contains the results of the gene ontology analysis performed for down-regulated genes in reoxygenation versus control samples in .txt format)7_A.thaliana orthologs (File contains orthologues of lupinus angustifolius genes in the model plant A.thaliana in .txt format)8_K-1 (File contains reports summarizing the results of sequencing for control sample in .pdf format)9_H-1 (File contains reports summarizing the results of sequencing for hypoxia sample in .pdf format)10_R-1 (File contains reports summarizing the results of sequencing for reoxygenation sample in .pdf format)METHODOLOGICAL INFORMATIONDescription of methods used for collection/generation of data: All methods are described in the article: Interplay between m6A modification and overall transcripts quantity: Impacts on mRNA composition in plant stress granules Dawid Jakub Kubiak, Michal Wojciech Szczesniak, Karolina Ostrowska, Dawid Bielewicz, Susheel Sagar Bhat, Katarzyna Niedojadlo, Zofia Szweykowska-Kulinska, Artur Jarmolowski, Rupert George Fray, Janusz Niedojadlo bioRxiv 2023.12.14.569339; doi: https://doi.org/10.1101/2023.12.14.569339Abbreviation list: K - control condition, H - 15h hypoxia, R - 15h hypoxia followed by 6h reoxygenation数据集名称：m6A修饰与总转录本丰度的相互作用：对植物应激颗粒中mRNA组成的影响——转录组学数据（Interplay between m6A modification and overall transcripts quantity: Impacts on mRNA composition in plant stress granules - transcriptomic data） 本数据集包含针对窄叶羽扇豆（Lupinus angustifolius）根部的RNA测序分析数据，共9个文库样本，分别取自生理对照条件、15小时低氧处理以及6小时复氧处理的植株根部，相关研究成果已发表于论文《Interplay between m6A modification and overall transcripts quantity: Impacts on mRNA composition in plant stress granules》。 作者：Dawid Jakub Kubiak¹（邮箱：[e-mail]）、Michal Wojciech Szczesniak² 机构：1. 波兰尼古拉·哥白尼大学细胞与分子生物学系，地址：Lwowska 1号，87-100 托伦市；2. 波兰亚当·密茨凯维奇大学生物学院人类生物学与进化研究所，地址：波兹南61-614号 数据采集日期：2023年 数据采集地理位置：波兰 关键词：应激颗粒、低氧、羽扇豆、转录组 语言：英语 资助信息：本数据采集工作受波兰国家科学中心资助，资助项目为PRELUDIUM系列，项目编号：2022/45/N/NZ9/04015 共享与使用说明：数据使用许可限制：CC0公共领域许可协议 数据文件概览 文件列表： 1. H_vs_K_up_genes：以.txt格式存储的对照样本与低氧样本中上调基因的基因本体（Gene Ontology, GO）富集分析结果 2. H_vs_K_down_genes：以.txt格式存储的对照样本与低氧样本中下调基因的基因本体富集分析结果 3. R_vs_H_up_genes：以.txt格式存储的复氧样本与低氧样本中上调基因的基因本体富集分析结果 4. R_vs_H_down_genes：以.txt格式存储的复氧样本与低氧样本中下调基因的基因本体富集分析结果 5. R_vs_K_up_genes：以.txt格式存储的复氧样本与对照样本中上调基因的基因本体富集分析结果 6. R_vs_K_down_genes：以.txt格式存储的复氧样本与对照样本中下调基因的基因本体富集分析结果 7. A.thaliana orthologs：以.txt格式存储的窄叶羽扇豆基因在模式植物拟南芥（Arabidopsis thaliana, A.thaliana）中的直系同源基因列表 8. K-1：以.pdf格式存储的对照样本测序结果汇总报告 9. H-1：以.pdf格式存储的低氧样本测序结果汇总报告 10. R-1：以.pdf格式存储的复氧样本测序结果汇总报告 方法学说明：本数据集涉及的全部实验方法已发表于预印本论文：Interplay between m6A modification and overall transcripts quantity: Impacts on mRNA composition in plant stress granules（Dawid Jakub Kubiak, Michal Wojciech Szczesniak, Karolina Ostrowska, Dawid Bielewicz, Susheel Sagar Bhat, Katarzyna Niedojadlo, Zofia Szweykowska-Kulinska, Artur Jarmolowski, Rupert George Fray, Janusz Niedojadlo, bioRxiv, 2023-12-14, 569339; DOI: https://doi.org/10.1101/2023.12.14.569339） 缩写说明：K代表生理对照条件，H代表15小时低氧处理，R代表15小时低氧处理后进行6小时复氧处理