NCLDV species trees

NIAID Data Ecosystem2026-03-11 收录

NCLDV系统发育分析

病毒基因进化

数据链接：

https://figshare.com/articles/dataset/NCLDV_species_trees/11774958 数据链接链接失效反馈

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资源简介：

These two trees were generated from the same alignment using different models in IQ-TREE. The alignment is also provided.

创建时间：

2020-01-30

Islands of linkage in an ocean of pervasive recombination reveals two-speed evolution of human cytomegalovirus genomes - Supplementary Files S1-S5

病毒基因进化

遗传变异分析

Supplementary File S1: Simulation parameter files and guide trees (ZIP archive) Supplementary File S2: PCA plot based on diversity of bi-allelic SNPs (PDF file). Same projection as in Figure S5, with

Mendeley Data2024-01-31 更新40

Deep sequencing of pan-genomes of macaque-tropic HIV-1 adapted to cynomolgus macaques

HIV-1动物模型

病毒基因进化

To establish suitable primate models of HIV-1 infection, we performed in vivo passages of R5-tropic macaque-tropic HIV-1 (HIV-1mt) which can efficiently proliferate in cynomolgus macaques (CMs). Pan-g

NIAID Data Ecosystem20

SARS-CoV-2 Uzbekistan MetaData

病毒基因进化

流行病学监测

Tracking temporal and spatial genomic changes and evolution of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in Uzbekistan. Genome sequence diversity of SARS-CoV-2 obtained from cli

Figshare2022-02-23 更新10

Codon positions of the coding regions in the U.S. CMV isolates affected by positive selection.

病毒基因进化

密码子正选择

**Sites detected as statistically significant by two methods.Statistically significant values have been illustrated as bold.

Figshare2015-12-02 更新40

Supplementary Files for Kawato et al. (2023) "Evolutionary genomics of white spot syndrome virus"2023-09-10: Missing file (ORF14-15.fa) in Online_Resource_5_genomic_deletions.zip has been added.

病毒基因进化

系统发育分析

Online_Resource_1_MAGs.zip : Draft metagenome-assembled genomes (MAGs) of WSSV identified from publicly available high-throughput sequencing datasets. Available in FASTA (.fa) and DDBJ (.ddbj) f

Figshare2023-09-10 更新20

NCLDV species trees

资源简介：

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