Heatmap of regional expression OPRM1 splice variant mRNAs.
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The heatmap was generated by clustering Z-scores calculated from the values (Log2 (E−ΔC(t)) of individual variants across different strains/regions using R statistical language (2.15.0) (www.r-project.org), and plotting based upon individual brain regions within each mouse strain with enhanced heatmap function heatmap.2 from gplots package. Pfc: prefrontal cortex; Str: striatum; Tha: thalamus; Hyp: hypothalamus; Hip: hippocampus; PAG: periaqueductal gray; BS: brainstem; Cb: cerebellum; Spc: spinal cord; WB: whole brain. 129∶129P3/J; B6: C56BL/6J; SJL: SJL/J; SWR: SWR/J. Expression level was indicated by Z-score.
本数据集的热图通过以下方式生成:首先针对不同品系/区域的个体变异的Log₂(E−ΔC(t))值计算得到Z分数,随后借助R统计语言(2.15.0版本,官网地址www.r-project.org)对该Z分数进行聚类,并调用gplots扩展包中的增强型热图函数heatmap.2,以各小鼠品系内的单个脑区为单位进行绘图;本次实验涉及的脑区缩写对应如下:Pfc:前额叶皮层(prefrontal cortex)、Str:纹状体(striatum)、Tha:丘脑(thalamus)、Hyp:下丘脑(hypothalamus)、Hip:海马体(hippocampus)、PAG:中脑导水管周围灰质(periaqueductal gray)、BS:脑干(brainstem)、Cb:小脑(cerebellum)、Spc:脊髓(spinal cord)、WB:全脑(whole brain);小鼠品系缩写对应为:129:129P3/J、B6:C56BL/6J、SJL:SJL/J、SWR:SWR/J;本数据集中的表达水平以Z分数进行表征。



