遇见数据集

Internode genes that fall in the 95% percentile of T2D association gene scores based on DIAGRAM meta-analysis using MAGENTA, and putative associations with T2D-related traits.

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Figshare2015-12-02 更新2026-04-29 收录
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Associations were looked-up in GWAS meta-analyses from the MAGIC, GIANT and ICBP consortiums for SNPs within 500 kb from the internode gene boundaries.*upregulated in our chronic insulin treatment (fold change = 1.4; FDR = 0.004) and in the Dor RNAi experiment (fold change = 1.33; FDR = 0.1).**Chromosome position based on genome build 36 (hg18).#Within the high confidence internode set.BMI: Body Mass Index; HDL: High Density Lipoprotein; LDL: Low Density Lipoprotein; 2 hrGluc: 2 hours glucose challenge; TC: total Cholesterol; WHR: Waist to Hip Ratio; TG: Triglycerides; DBP:Diastolic Blood Pressure; SBP: Systolic Blood Pressure; HbA1C: Glycaeted Hemoglobin; FastGluc: Fasting Glucose levels; HGNC: HUGO Gene Nomenclature committee.

本研究针对基因间区边界上下游500 kb范围内的单核苷酸多态性(Single Nucleotide Polymorphism,SNP),在MAGIC、GIANT及ICBP联盟的全基因组关联研究(Genome-Wide Association Study,GWAS)荟萃分析中检索其关联信息。*该基因在本团队的慢性胰岛素处理实验中呈上调表达(折叠变化=1.4;错误发现率(False Discovery Rate,FDR)=0.004),同时在Dor RNA干扰(RNA interference,RNAi)实验中亦呈上调表达(折叠变化=1.33;FDR=0.1)。**染色体位置基于人类基因组组装版本36(hg18)标注。#该基因属于高置信度基因间区集合。相关术语说明如下:BMI(身体质量指数,Body Mass Index)、HDL(高密度脂蛋白,High Density Lipoprotein)、LDL(低密度脂蛋白,Low Density Lipoprotein)、2 hrGluc(2小时葡萄糖负荷试验,2 hours glucose challenge)、TC(总胆固醇,total Cholesterol)、WHR(腰臀比,Waist to Hip Ratio)、TG(甘油三酯,Triglycerides)、DBP(舒张压,Diastolic Blood Pressure)、SBP(收缩压,Systolic Blood Pressure)、HbA1C(糖化血红蛋白,Glycaeted Hemoglobin)、FastGluc(空腹血糖,Fasting Glucose levels)、HGNC(人类基因命名委员会,HUGO Gene Nomenclature committee)

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2015-12-02
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