Processed Plaque-2.0 infection scores of the PCL screen for RV, imaged and analysed at UZH.
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virus indicates virus genotype, the PCL was tested against, compoundIdentifier indicates the UZH identifier for blinded testing by UZH, PCL_ID and compoundName disclose the PCL compound identifier and name, respectively. Barcode1, Barcode2, Barcode3 and Barcode4 indicate on which screening plates, given by the screening plate sequence number defined by EPFL, the PCL compound was tested on. The PrestoBlue toxicity scoring of the compound tested in noninfected cells is given as 1 (toxic) and 0 (non-toxic) in nonInfectedToxHit. The mean Plaque2.0-based infection scores of the four biological replicates are provided by mean_numberOfNuclei (number of nuclei based on Hoechst staining), mean_numberOfInfectedNuclei (number of GFP reporter-based infected nuclei), mean_infectionIndex (ratio of numberOfInfectedNuclei to numberOfNuclei), mean_numberOfPlaques (number of GFP reporter-based plaques) and mean_totalVirusIntensity (total GFP reporter signal intensity). The infection scores of the positive and negative controls are averaged (mean) over the 32 technical replicates, each, per plate, and the mean PCL compound infection scores were normalized by the mean negative control infection score of the respective plate indicated by by mean_numberOfNucleiRel (number of nuclei based on Hoechst staining), mean_numberOfInfectedNucleiRel (number of GFP reporter-based number of infected nuclei), mean_infectionIndexRel (ratio of numberOfInfectedNuclei to numberOfNuclei), mean_numberOfPlaquesRel (number of GFP reporter-based plaques) and mean_totalVirusIntensityRel (total GFP reporter signal intensity).
本数据集中的virus字段指代病毒基因型(virus genotype),即本次实验所靶向的病毒型别,PCL(PCL)为本次测试的受试化合物。compoundIdentifier字段指代苏黎世大学(UZH)开展盲法测试时使用的UZH编号;PCL_ID与compoundName字段分别对应受试PCL化合物的标识符与正式名称。Barcode1、Barcode2、Barcode3与Barcode4字段分别指代受试PCL化合物所在的筛选板,该筛选板的序列号由洛桑联邦理工学院(EPFL)预先定义。非感染细胞中受试化合物的普斯托蓝(PrestoBlue)毒性评分在nonInfectedToxHit字段中以1表示有毒、0表示无毒。本次实验包含4次生物学重复,其基于噬斑2.0(Plaque2.0)的平均感染评分通过以下字段体现:mean_numberOfNuclei(基于赫斯特染色(Hoechst staining)的细胞核总数)、mean_numberOfInfectedNuclei(基于绿色荧光蛋白(GFP)报告基因的感染细胞核总数)、mean_infectionIndex(感染细胞核数与总细胞核数的比值)、mean_numberOfPlaques(基于GFP报告基因的噬斑总数)以及mean_totalVirusIntensity(GFP报告基因的总信号强度)。阳性对照与阴性对照的感染评分均以每块板内32次技术重复的平均值计算;受试PCL化合物的平均感染评分以对应板的阴性对照平均感染评分进行标准化,该标准化结果通过以下字段体现:mean_numberOfNucleiRel(基于赫斯特染色的相对细胞核总数)、mean_numberOfInfectedNucleiRel(基于GFP报告基因的相对感染细胞核总数)、mean_infectionIndexRel(相对感染指数,即感染细胞核数与总细胞核数的比值)、mean_numberOfPlaquesRel(基于GFP报告基因的相对噬斑总数)以及mean_totalVirusIntensityRel(GFP报告基因的相对总信号强度)。



