Table S1 from Lupo et al. Contamination in reference sequence databases: time for divide-and-rule tactics.

This Excel file is Table S1: Contamination levels for 111,088 bacterial genomes of NCBI RefSeq. This table includes all CheckM classic output fields of contamination estimation (option lineage_wf). Estimates from Physeter in k-fold mode are further provided for 12,326 genomes for which CheckM values were not usable. The reasons for the rejection of CheckM estimates in these cases are given.本Excel文件为表S1：NCBI RefSeq数据库111088条细菌基因组的污染水平数据。本表格涵盖了污染评估中CheckM经典工作流程（lineage_wf选项）的全部输出字段。针对12326条无法获得有效CheckM评估结果的基因组，本表格额外提供了Physeter工具的k折模式估算结果，同时列出了此类场景中舍弃CheckM评估结果的具体原因。