Human rDNA unit size
收藏资源简介:
Raw_read file contains nanopore reads in FASTA format analysed from a nanopore dataset (PRJNA200694) used to determine rDNA unit size for Humans.Con_reads files contain raw nanopore reads individual rDNA unit sequences were extracted from to generate the long and short consensus sequence in FASTA format.Con_indiv_units files contain individual rDNA unit sequences extracted from nanopore reads used to generate the long and short consensus sequence in FASTA format.Consensus_alignment files contains the alignement output in .geneious format.Annotated_Consensus files contains the two annotated consensus sequences in .geneious format.align_Human_long/short_con_with_ref file contains the rDNA consensus sequence aligned to a reference sequence (NCBI accession GL000220; see Agrawal & Ganley, 2018).Average rDNA unit size was generated using the included excel spreadsheet.
Raw_read文件包含FASTA格式(FASTA)的纳米孔测序读段(nanopore reads),该数据集源自PRJNA200694项目的纳米孔测序数据集,用于测定人类核糖体DNA(ribosomal DNA,简称rDNA)的单元大小。Con_reads文件包含原始纳米孔测序读段,研究人员从这些读段中提取单个rDNA单元序列,以生成FASTA格式的长、短共有序列(consensus sequence)。Con_indiv_units文件包含从纳米孔测序读段中提取的单个rDNA单元序列,这些序列被用于生成FASTA格式的长、短共有序列。Consensus_alignment文件包含.geneious格式(.geneious)的比对输出结果。Annotated_Consensus文件包含两条经过注释的共有序列,格式为.geneious。align_Human_long/short_con_with_ref文件包含与参考序列(NCBI登录号GL000220(NCBI accession);参见Agrawal & Ganley, 2018)比对的rDNA共有序列。平均rDNA单元大小通过随附的Excel电子表格计算得出。



