This dataset provides comprehensive annotations for the telomere-to-telomere (T2T) genome assembly of soybean (*Glycine max*) cultivar QH34. It includes: 1. **Gene structure annotation** (`QH34_T2T_C
Deciphering the various chemical modifications of both DNA and the histone compound of chromatin not only leads to a better understanding of the genome-wide organization of epigenetic landmarks and th