BacDive - The Bacterial Diversity Database

The Bacterial Diversity Metadatabase BacDive is the worldwide largest database for standardized bacterial phenotypic information. Its mission is to mobilize research data on strain level from internal files in culture collections (e.g. CABI, CIP, CCUG, DSMZ) as well as from primary literature and make it freely accessible. Today BacDive offers data on 93,254 bacterial and archaeal strains, including 19,313 type strains and thereby covers approx. 90% of the validly described species. Within over 600 data fields the topics taxonomy, morphology, physiology, origin, molecular data, and cultivation conditions are covered. The database offers systematic access to phenotypic data. BacDive thereby enables queries like "show me all strains that grow under certain conditions” by using the Advanced search or queries like “show me all strains isolated from a marine environment” by using the Isolation source search. With currently 15,357 API® tests for 27,634 strains, BacDive also offers the worldwide largest API® test collection, which can be queried using the API test finder tool.细菌多样性元数据库（Bacterial Diversity Metadatabase）BacDive 是全球规模最大的标准化细菌表型信息（phenotypic information）数据库。其使命是汇集保藏中心（例如CABI、CIP、CCUG、DSMZ）内部档案以及原始文献中的菌株级研究数据，并向公众免费开放获取。目前，BacDive 收录了93,254株细菌与古菌菌株，其中包含19,313株模式菌株（type strains），覆盖约90%已有效发表的物种。该数据库设有超600个数据字段，涵盖分类学、形态学、生理学、分离来源、分子数据及培养条件等主题。数据库为表型数据提供系统化检索途径，支持通过高级检索（Advanced search）功能执行“检索所有可在特定条件下生长的菌株”类查询，或通过分离源检索（Isolation source search）功能执行“检索所有分离自海洋环境的菌株”类查询。此外，BacDive 目前已为27,634株菌株收录15,357项API®试验数据，拥有全球规模最大的API®试验数据集，用户可通过API试验检索工具（API test finder tool）进行相关查询。

搜集汇总

背景与挑战

背景概述

BacDive是全球最大的标准化细菌表型信息数据库，整合了来自培养物保藏中心和文献的菌株水平研究数据，目前包含超过10万个细菌和古菌菌株，覆盖约90%的有效描述物种。它提供超过600个数据字段，涵盖分类学、形态学、生理学等多个主题，并支持高级搜索和API测试查找等工具，以促进数据查询和访问。