4.Selection

Dryad2013-01-01 更新2026-04-13 收录

分子进化

正选择

数据链接：

http://datadryad.org/resource/doi:10.5061/dryad.39309/4 数据链接链接失效反馈

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资源简介：

Positive Selection results from PAML and TreeSAAP. Control files used for Branch, Branch-Site and Site models.

创建时间：

2013-01-01

PAML4_CodeML_infiles

分子进化

dN/dS比率

we estimated the non-synonymous/synonymous rate ratio (dN/dS) at each codon site using the Bayesian approach implemented in the CodeML program of the PAML4 package (Yang 2007) .

DataONE2015-06-25 更新110

Proffitt et al (submitted, Mol Cell Endocrinol) AR MEME Tables.xlsx

分子进化

雄激素受体进化

This Excel file contains the results of a MEME (mixed effects model of evolution) analysis (Murrell, B. et al., 2012) of site-specific evolution of two teleost androgen receptors, ARα and ARβ.

DataCite Commons2025-06-01 更新60

RuBisCO tree (including Form I')

RuBisCo基因序列

分子进化

Fasta file and maximum likelihood tree of trimmed, aligned RuBisCo sequences (including Form I'). Sequences are taken from metagenomic assemblies and are representative across all Forms of RuBisCO.

Figshare2019-10-15 更新30

Figure S2. Cophylogeny analysis

共系统发育分析

分子进化

Input files for generating maximum likelihood trees using RAxML:raxml -p $Seed -f a -x $Seed -s $infile -n $outfile -m GTRGAMMA -# 100\nCode and input files for generating cophylogeny for CH7BAC7 and

Figshare2021-10-28 更新60

Nitrogenase ASR statefile, WAG model

生物信息学

分子进化

ASR statefile for nitrogenase subunit D and outgroups, using WAG+R10 model

DataCite Commons2022-10-24 更新60