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672 gene trees generated via PhyML
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创建时间：
2015-01-01
相关数据集
PAML4_CodeML_infiles
we estimated the non-synonymous/synonymous rate ratio (dN/dS) at each codon site using the Bayesian approach implemented in the CodeML program of the PAML4 package (Yang 2007) .
DataONE2015-06-25 更新110
Proffitt et al (submitted, Mol Cell Endocrinol) AR MEME Tables.xlsx
This Excel file contains the results of a MEME (mixed effects model of evolution) analysis (Murrell, B. et al., 2012) of site-specific evolution of two teleost androgen receptors, ARα and ARβ.
DataCite Commons2025-06-01 更新60
Ecology and phylogeny of nitric oxide producing nitrite reductases NirK and NirS
nirK_2021_woutgroup.faa.fasta: Amino acid alignment of Cu-type nitrite reductase proteins and outgroup NirK_export_from_ITOL_bootstraps.nwk: Maximum likelihood tree of amino acid alignmen
Figshare2024-04-09 更新30
Figure S2. Cophylogeny analysis
Input files for generating maximum likelihood trees using RAxML:raxml -p $Seed -f a -x $Seed -s $infile -n $outfile -m GTRGAMMA -# 100\nCode and input files for generating cophylogeny for CH7BAC7 and
Figshare2021-10-28 更新60
Nitrogenase ASR statefile, WAG model
ASR statefile for nitrogenase subunit D and outgroups, using WAG+R10 model
DataCite Commons2022-10-24 更新60
