we estimated the non-synonymous/synonymous rate ratio (dN/dS) at each codon site using the Bayesian approach implemented in the CodeML program of the PAML4 package (Yang 2007) .
Input files for generating maximum likelihood trees using RAxML:raxml -p $Seed -f a -x $Seed -s $infile -n $outfile -m GTRGAMMA -# 100\nCode and input files for generating cophylogeny for CH7BAC7 and
This Excel file contains the results of a MEME (mixed effects model of evolution) analysis (Murrell, B. et al., 2012) of site-specific evolution of two teleost androgen receptors, ARα and ARβ.
